Calculate mu_ij values based on coefficient data frame and scaling factor
getMu_ij.RdThis function calculates mu_ij values by raising 2 to the power of the log_qij values from the coefficient data frame and multiplying it by the provided scaling factor.
Examples
list_var <- init_variable()
#> Variable name should not contain digits, spaces, or special characters.
#> If any of these are present, they will be removed from the variable name.
dtf_coef <- getInput2simulation(list_var, 10)
dtf_coef <- getLog_qij(dtf_coef)
dtf_coef <- addBasalExpression(dtf_coef, 10, c(10, 20, 0))
getMu_ij(dtf_coef)
#> geneID label_myVariable myVariable log_qij basalExpr log_qij_scaled
#> 1 gene1 myVariable1 -0.154106721 -0.154106721 10 9.84589328
#> 2 gene1 myVariable2 0.049094554 0.049094554 10 10.04909455
#> 3 gene10 myVariable1 -0.101898307 -0.101898307 0 -0.10189831
#> 4 gene10 myVariable2 0.040227637 0.040227637 0 0.04022764
#> 5 gene2 myVariable1 -0.313238404 -0.313238404 0 -0.31323840
#> 6 gene2 myVariable2 -0.164539355 -0.164539355 0 -0.16453936
#> 7 gene3 myVariable1 -0.128901663 -0.128901663 0 -0.12890166
#> 8 gene3 myVariable2 -0.059714742 -0.059714742 0 -0.05971474
#> 9 gene4 myVariable1 -0.207473070 -0.207473070 0 -0.20747307
#> 10 gene4 myVariable2 0.024960527 0.024960527 0 0.02496053
#> 11 gene5 myVariable1 0.162288711 0.162288711 10 10.16228871
#> 12 gene5 myVariable2 0.451349934 0.451349934 10 10.45134993
#> 13 gene6 myVariable1 -0.122678945 -0.122678945 20 19.87732106
#> 14 gene6 myVariable2 -0.014344723 -0.014344723 20 19.98565528
#> 15 gene7 myVariable1 -0.162665729 -0.162665729 10 9.83733427
#> 16 gene7 myVariable2 0.007534696 0.007534696 10 10.00753470
#> 17 gene8 myVariable1 0.237169546 0.237169546 10 10.23716955
#> 18 gene8 myVariable2 0.066885838 0.066885838 10 10.06688584
#> 19 gene9 myVariable1 0.050108799 0.050108799 0 0.05010880
#> 20 gene9 myVariable2 0.059211462 0.059211462 0 0.05921146
#> mu_ij
#> 1 1.888066e+04
#> 2 2.313483e+04
#> 3 9.031214e-01
#> 4 1.041048e+00
#> 5 7.310756e-01
#> 6 8.482844e-01
#> 7 8.790604e-01
#> 8 9.420332e-01
#> 9 8.126351e-01
#> 10 1.025275e+00
#> 11 2.590752e+04
#> 12 3.459104e+04
#> 13 4.291517e+08
#> 14 4.782553e+08
#> 15 1.871975e+04
#> 16 2.219306e+04
#> 17 2.792198e+04
#> 18 2.355011e+04
#> 19 1.051385e+00
#> 20 1.061000e+00