Extracts evaluation data from a DESeqDataSet (dds) object.

This function takes a DESeqDataSet object, performs tidy evaluation, extracts model parameters (beta in the case of DESeqDataSet), and compares them to the ground truth effects. Additionally, it evaluates and compares dispersion inferred from DESeqDataSet with the ground truth gene dispersion. The results are organized in two data frames, one for model parameters and one for dispersion, both #' labeled as "HTRfit".

Usage

get_eval_data_from_dds(dds, mock_obj, coeff_threshold, alt_hypothesis)

Arguments

dds

A DESeqDataSet object.

mock_obj

A mock object containing ground truth information.

coeff_threshold

The coefficient threshold wald test

alt_hypothesis

The alternative hypothesis wald test

Value

A list containing data frames for model parameters and dispersion.